Those headers come from CUDA SDK.
To update, install CUDA SDK locally:
sudo apt-get install cuda
Copy cuda.h, version.txt and libdevice.10.bc:
cp /usr/local/cuda/include/cuda.h ./include/ cp /usr/local/cuda/version.txt . cp /usr/local/cuda/nvvm/libdevice/libdevice.10.bc ./nvvm/libdevice/